Submissions:GO Top
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General description
| Name: | Gene Ontology Top Level |
|---|---|
| Submitted by: | AldoGangemi |
| Also Known As: | |
| Intent: | To represent types of gene-related entities and their parts. |
| Domains: | |
| Competency Questions: |
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| Solution description: | - |
| Reusable OWL Building Block: | http://www.ontologydesignpatterns.org/cp/owl/gotop.owl (788) |
| Consequences: | It allows to categorize gene-related types into three main types.
It allows to represent parts of gene-related entities (transitively). It does not allow to represent the relationships between entities of different types. It does not say anything about disjointness of categories. |
| Scenarios: | A 'template for synthesis of G-rich strand of telomere DNA activity' must be part of a 'telomerase activity', All 'templates for synthesis of G-rich strand of telomere DNA activity' are 'molecular functions' |
| Known Uses: | |
| Web References: | |
| Other References: | |
| Examples (OWL files): | |
| Extracted From: | |
| Reengineered From: | |
| Has Components: | |
| Specialization Of: | |
| Related CPs: |
Elements
The GO Top Content OP locally defines the following ontology elements:
Cellular component (owl:Class) The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
CellularComponent page Molecular function (owl:Class) Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
MolecularFunction page Biological process (owl:Class) Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
BiologicalProcess page
part of (owl:ObjectProperty) Transitive part of relation from obo2owl in the gene ontology
partOf pageAdditional information
This pattern is peculiar to the biomolecular domain, where types of entities, rather than specific instances, are the main focus of interest. As a result, the Gene Ontology, based on this top-level categories, is a huge TBox. Part of can have this pattern as a specialization, if the three gene-related categories are considered as owl:subClassOf Entity.
Scenarios
No scenario is added to this Content OP.
Reviews
There is no review about this proposal. This revision (revision ID 9268) takes in account the reviews: none
Other info at evaluation tab
Modeling issues
There is no Modeling issue related to this proposal.
References
- The Gene Ontology website Documentation | reference page
