Submissions:GO Top
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General description
Name: | Gene Ontology Top Level |
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Submitted by: | User:AldoGangemi |
Also Known As: | |
Intent: | To represent types of gene-related entities and their parts. |
Domains: | |
Competency Questions: |
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Solution description: | |
Reusable OWL Building Block: | http://www.ontologydesignpatterns.org/cp/owl/gotop.owl (784) |
Consequences: | It allows to categorize gene-related types into three main types.
It allows to represent parts of gene-related entities (transitively). It does not allow to represent the relationships between entities of different types. It does not say anything about disjointness of categories. |
Scenarios: | A 'template for synthesis of G-rich strand of telomere DNA activity' must be part of a 'telomerase activity', All 'templates for synthesis of G-rich strand of telomere DNA activity' are 'molecular functions' |
Known Uses: | |
Web References: | http://www.geneontology.org |
Other References: | |
Examples (OWL files): | |
Extracted From: | |
Reengineered From: | |
Has Components: | |
Specialization Of: | |
Related CPs: |
Elements
The GO Top Content OP locally defines the following ontology elements:
Cellular component (owl:Class) The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
Molecular function (owl:Class) Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
Biological process (owl:Class) Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
This pattern is peculiar to the biomolecular domain, where types of entities, rather than specific instances, are the main focus of interest. As a result, the Gene Ontology, based on this top-level categories, is a huge TBox. Part of can have this pattern as a specialization, if the three gene-related categories are considered as owl:subClassOf Entity.
Reviews
There is no review about this proposal. This revision (revision ID 3095) takes in account the reviews: none
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